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- Graduate School of Information Science and Technology
- Graduate School of Interdisciplinary Information Studies (GII)
- Graduate School of Engineering
- Graduate School of Science
- Graduate School of Frontier Sciences
- Graduate School of Education
- Graduate School of Mathematical Sciences
- Graduate School of Humanities and Society
- Graduate School of Medicine
- Graduate School of Pharmaceutical Sciences
- Graduate School of Economics
- Graduate School of Public Policy
- Graduate School of Arts and Sciences
- Graduate School of Agricultural and Life Sciences
- Graduate Schools for Law and Politics
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